首页>研究单元>中国科学院合成生物学重点实验室>研究成果>发表文章>2011

2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004-2002

  1. Pei Hao, Huajun Zheng, Yao Yu, Guohui Ding, Wenyi Gu, Shuting Chen, Zhonghao Yu, Shuangxi Ren, Munehiro Oda, Tomonobu Konno, Shengyue Wang, Xuan Li*, ZaiSi Ji* and Guoping Zhao* (2011) Complete Sequencing and Pan-Genomic Analysis of Lactobacillus delbrueckii subsp. bulgaricus Reveal Its Genetic Basis for Industrial Yogurt Production. PLoS ONE. 6(1): e15964.
  2. Zhihui Shao, Jin Gao, Xiaoming Ding, Jin Wang, Juishen Chiao, Guoping Zhao* (2011) Identification and functional analysis of a nitrate assimilation operon nasACKBDEF from Amycolatopsis mediterranei U32. Arch Microbiol. 193(7): 463-477.
  3. Qing Zhang, Yunyi Zhang, Yi Zhong, Jun Ma, Nanqiu Peng, Xingjun Cao, Chen Yang, Rong Zeng, Xiaokui Guo and Guoping Zhao* (2011) Leptospira interrogans encodes an ROK family glucokinase involved in a cryptic glucose utilization pathway. Acta Biochim Biophys Sin (Shanghai) . 43(8): 618-29.
  4. Hua Yuan, Wei Zhao, Yi Zhong, Jin Wang, Zhongjun Qin, Xiaoming Ding and Guoping Zhao* (2011) Two genes, rif15 and rif16, of the rifamycin biosynthetic gene cluster in Amycolatopsis mediterraneilikely encode a transketolase and a P450 monooxygenase, respectively, bothessential for the conversion of rifamycin SV into B. Acta Biochim Biophys Sin (Shanghai) . 43(12): 948-956.
  5. Yi Zhong, Xiao Chang, Xingjun Cao, Yan Zhang, Huajun Zheng, Yongzhang Zhu, Chengsong Cai, Zelin Cui, Yunyi Zhang, Yuanyuan Li, Guoping Zhao, Shengyue Wang*, Yixue Li*, Rong Zeng*, Xuan Li*, Xiaokui Guo* (2011) Comparative Proteogenomic Analysis of the Leptospira interrogans Virulence Attenuated Strain IPAV against the Pathogenic Strain 56601. Cell Research. 21(8): 1210-1229.
  6. Jun Yin, Zixin Deng, Guoping Zhao and Xi Huang* (2011) The N-terminal nucleophile serine of cephalosporin acylase executes the second autoproteolytic cleavage and acylpeptide hydrolysis. J Biol Chem. 286(27): 24476-24486.
  7. Yongcong Tan, Qijun Wang, Guoping Zhao* and Yufeng Yao* (2011) Protein post-translational modification in prokaryotes. Prog Biochem Biophys. 38(3): 197-203.
  8. Lin Zhang, Guoping Zhao*, Xiaoming Ding* (2011) Tandem assembly of the epothilone biosynthetic gene cluster by in vitro site-specific recombination. Scientific Reports 1: 141
  9. Qiang Gao, Kai Jin, Shenghua Ying, Yongjun Zhang, Guohua Xiao, Yanfang Shang, Zhibing Duan, Xiao Hu, Xueqin Xie, Gang Zhou, Guoxiong Peng, Zhibing Luo, Wei Huang, Bing Wang, Weiguo Fang, Sibao Wang, Yi Zhong, Lijun Ma, Raymond J St Leger, Guoping Zhao, Yan Pei, Mingguang Feng*, Yuxian Xia* and Chengshu Wang* (2011) Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum. PLoS Genet. 7(1): e1001264.
  10. Peng Zheng, Yongliang Xia, Guohua Xiao, Chenghui Xiong, Xiao Hu, Siwei Zhang, Huajun Zheng,Yin Huang, Yan Zhou, Shengyue Wang, Guoping Zhao, Xingzhong Liu, Raymond J St Leger and Chengshu Wang* (2011) Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional Chinese medicine. Genome Biology. 12(11): R116.
  11. Bikui Tang, Ruihua Zhao, Yong Sun, Ying Zhu, Jiang Zhong, Guoping Zhao and Naishuo Zhu* (2011) Interleukin-6 expression was regulated by epigenetic mechanisms in response to influenza virus infection or dsRNA treatmen. Mol Immunol. 48(8): 1001-1008
  12. Xiaoyan You, Xu Guo, Huajun Zheng, Mingjiang Zhang, Lijun Liu, Yongqiang Zhu, Baoli Zhu, Shengyue Wang, Guoping Zhao, Ansgar Poetsch, Chengying Jiang*, Shuangjiang Liu* (2011) Unraveling the Acidithiobacillus caldus complete genome and its central metabolisms for carbon assimilation. Journal of Genetics and Genomics 38(6): 243-252.
  13. Weihua Yue, Haifeng Wang, Liangdan Sun, Fulei Tang, Zhonghua Liu, Hongxing Zhang, Wenqiang Li, Yanling Zhang, Yang Zhang, Cuicui Ma, Bo Du, Lifang Wang, Yunqing Ren, Yongfeng Yang, Xiaofeng Hu, Yi Wang, Wei Deng, Liwen Tan, Yunlong Tan, Qi Chen, Guangming Xu, Guigang Yang, Xianbo Zuo, Hao Yan, Yanyan Ruan, Tianlan Lu, Xue Han, Xiaohong Ma, Yan Wang, Liwei Cai, Chao Jin, Hongyan Zhang, Jun Yan, Weifeng Mi, Xianyong Yin, Wenbin Ma, Qi Liu, Lan Kang, Wei Sun, Chengying Pan, Mei Shuang, Fude Yang, Chuanyue Wang, Jianli Yang, Keqing Li, Xin Ma, Lingjiang Li, Xin Yu, Qizhai Li, Xun Huang, Luxian Lv, Tao Li, Guoping Zhao, Wei Huang*, Xuejun Zhang & Dai Zhang* (2011) Genome-wide association study identifies a susceptibility locus for schizophrenia in Han Chinese at 11p11.2. Nature Genetics 43(12): 1228-1231.
  14. Yang Liu, Haiming Xu, Suchao Chen, Xianfeng Chen, Zhenguo Zhang, Zhihong Zhu, Xueying Qin, Landian Hu, Jun Zhu, Guoping Zhao, Xiangyin Kong* (2011) Genome-Wide Interaction-Based Association Analysis Identified Multiple New Susceptibility Loci for Common Diseases. PLoS Genet. 7(3): e1001338.
  15. Hui Dong*, Hongyi Zhang, Jianping Liang, Huadong Yan, Yangyi Chen, Yan Shen, Yalin Kong, Shengyue Wang, Guoping Zhao and Weirong Jin (2011) Digital karyotyping reveals probable target genes at 7q21.3 locus in hepatocellular carcinoma. BMC Med Genomics. 4:60.
  16. Chen Tan, Zhuofei Xu, Huajun Zheng, Wugang Liu, Xibiao Tang, Jin Shou, Bin Wu, Shengyue Wang, Guoping Zhao and Huanchun Chen* (2011) Genome sequence of a porcine extraintestinal pathogenic Escherichia coli strain. J Bacteriol. 193(18): 5038.
  17. Fuchao Li, Peng Jiang, Huajun Zheng, Shengyue Wang, Guoping Zhao, Song Qin*, and Zhaopu Liu* (2011) Draft Genome Sequence of the Marine Bacterium Streptomyces griseoaurantiacus M045, Which Produces Novel Manumycin-Type Antibiotics with a pABA Core Component. J Bacteriol. 193(13): 3417–3418.
  18. Hui Dong, Yangyi Chen, Yan Shen, Shengyue Wang, Guoping Zhao* and Weirong Jin* (2011) Artificial duplicate reads in sequencing data of 454 Genome Sequencer FLX System. Acta Biochim Biophys Sin (Shanghai) 43 (6): 496-500.
  19. Zhoutong Sun, Yuanyuan Ning, Lixia Liu, Yingmiao Liu, Bingbing Sun, Weihong Jiang, Chen Yang , Sheng Yang* (2011) Metabolic engineering of the L-phenylalanine pathway in Escherichia coli for the production of S- or R-mandelic acid. Microb Cell Fact. 10(1): 71.
  20. Shiyuan Hu, Huajun Zheng, Yang Gu, Jingbo Zhao, Weiwen Zhang, Yunliu Yang, Shengyue Wang, Guoping Zhao, Sheng Yang* and Weihong Jiang* (2011) Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018. BMC Genomics. 12: 93.
  21. Han Xiao, Yang Gu, Yuanyuan Ning, Yunliu Yang, Wilfrid J. Mitchell, Sheng Yang*, and Weihong Jiang*(2011) Confirmation and Elimination of Xylose Metabolism Bottlenecks in Glucose Phosphoenolpyruvate-Dependent Phosphotransferase System-Deficient Clostridium acetobutylicum for Simultaneous Utilization of Glucose, Xylose, and Arabinose. Appl Environ Microb. 77(22): 7886-7895.
  22. Yinhua Lu, Juanmei He, Hong Zhu, Zhenyu Yu, Rui Wang, Yunliang Chen, Fujun Dang, Weiwen Zhang, Sheng Yang, and Weihong Jiang* (2011) An Orphan Histidine Kinase, OhkA, Regulates Both Secondary Metabolism and Morphological Differentiation in Streptomyces coelicolor. J Bacteriol. 193(12): 3020-3032.
  23. Li Zhu, Rongsheng Tao, Yi Wang, Yu Jiang, Xin Lin,Yunliu Yang, Huabao Zheng, Weihong Jiang, Sheng Yang*(2011) Removal of L: -alanine from the production of L: -2-aminobutyric acid by introduction of alanine racemase and D: -amino acid oxidase. Appl Microbiol Biot. 90(3):903-910.
  24. Dalong Zhang, Fuyun Zhu, Wenchao Fan, Rongsheng Tao, Hong Yu, Yunliu Yang, Weihong Jiang, Sheng Yang* (2011) Gradually accumulating beneficial mutations to improve the thermostability of N-carbamoyl-D: -amino acid amidohydrolase by step-wise evolution. Appl Microbiol Biot. 90(4): 1361-1371.
  25. Yang Gu, Yu Jiang, Hui Wu, Xudong Liu, Zhilin Li, Jian Li, Han Xiao, Zhaobing Shen, Hongjun Dong, Yunliu Yang, Yin Li, Weihong Jiang* and Sheng Yang* (2011) Economical challenges to microbial producers of butanol: Feedstock, butanol ratio and titer. Biotechnol J. 6(11): 1348-57.
  26. Weihua Chen and Zhongjun Qin* (2011) Development of a gene cloning system in a fast-growing and moderately thermophilic Streptomyces species and heterologous expression of Streptomyces antibiotic biosynthetic gene clusters. BMC Microbiol. 11(1): 243.
  27. Peng Guo, Qiuxiang Cheng, Pegnfei Xie, Yun Fan, Weihong Jiang, and Zhongjun Qin* (2011) Characterization of the multiple CRISPR loci on Streptomyces linear plasmid pSHK1. Acta Biochim Biophys Sin (Shanghai) . 43(8): 630-639.
  28. Ana Zeng , Tao Wang ,Haiyang Xia, Shiyuan Peng, Weihua Chen, Chaneglin Jiang, Lihua Xu, Li Zhong, Meijuan Shen*, and Zhongjun Qin* (2011) Development of a vector and host system and characterization of replication of plasmid pSQ10 in moderately halophilic Nocardiopsis. Acta Biochim Biophys Sin (Shanghai)43(9): 738-743.
  29. Jun Zhang, Yongjun Wei, Wei Xiao, Zhihua Zhou, Xing Yan* (2011) Performance and spatial community succession of an anaerobic baffled reactor treating acetone–butanol–ethanol fermentation wastewater. Bioresource Technol. 102: 7407–7414.
  30. Ruofan Wang, Wenming Zong, Changli Qian, Yongjun Wei，Ruisong Yu, Zhihua Zhou* (2011) Isolation of Clostridium perfringens strain W11 and optimization of its biohydrogen production by genetic modification. Int J Hydrogen Energ. 36: 12159-12167.
  31. Liang Ma, Jun Zhang，Gen Zou，Chengshu Wang，Zhihua Zhou* (2011) Improvement of cellulase activity in Trichoderma reesei by heterologous expression of a beta-glucosidase gene from Penicillium decumbens. Enzyme Microb. Technol. 49(4): 366-371.
  32. Ning Liu, Xing Yan, Meiling Zhang, Lei Xie, Qian Wang,Yongping Huang, Xuguo Zhou, Shengyue Wang, Zhihua Zhou* (2011) Microbiome of fungus-growing termites: a new reservoir for mining lignocellulase genes. Appl Environ Microb. 77(1): 48-56.
  33. Semen A. Leyn, Xiaoqing Li, Qingxiang Zheng, Pavel S. Novichkov, Samantha Reed, Margaret F. Romine, James K. Fredrickson, Chen Yang, Andrei L. Osterman, and Dmitry A. Rodionov* (2011) Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis. J Biol Chem. 286(41): 35782–35794.
  34. Wei Xu, Hui Yang, Ying Liu, Ying Yang, Ping Wang, Se-Hee Kim, Shinsuke Ito, Chen Yang, Pu Wang, Mengtao Xiao, Lixia Liu, Wenqing Jiang, Jing Liu, Jinye Zhang, Bin Wang, Stephen Frye, Yi Zhang, Yanhui Xu, Qunying Lei, Kun-Liang Guan*, Shimin Zhao*, Yue Xiong* (2011) Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases. Cancer Cell 19(1): 17-30.
  35. Hailin Meng, Yong Wang*, Siliang Zhang, Xiaoning wang (2011) In silico Analysis and Experimental Improvement of Taxadiene Heterologous Biosynthesis in Escherichia coli. Biotechnol Bioproc E. 16 (2): 205-215.
  36. Hailin Meng, Zhiguo Lu, Yong Wang*, Siliang Zhang, Xiaoning Wang (2011)In silico Improvement of Heterologous Biosynthesis of Erythromycin Precursor 6-Deoxyerythronolide B in Escherichia coli. Biotechnol Bioproc E. 16(3): 445-456.
  37. Feifei Chen, Ling Lin, Lu Wang, Yi Tan, Hongxia Zhou, Yiguang Wang, Yong Wang* and Weiqing He* (2011) Distribution of dTDP–glucose-4,6 dehydratase genes and diversity of potential glycosylated natural products in marine bacteria. Appl Microbiol Biot. 90(4): 1347-1359.
  38. Qiongyi Zhao, Yi Wang, Yimeng Kong, Da Luo, Xuan Li* and Pei Hao* (2011) Optimizing de novo transcriptome assembly fom short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12(Suppl 14):S2.
  39. Yun Li, Kang Tu, Siyuan Zheng, JingfangI Wang, Yixue Li, Pei Hao, Xuan Li* (2011) Association of feature gene expression with structural fingerprints of chemical compounds. J Bioinform Comput Biol. 9(4): 503-519.
  40. Wenqian Wei, Fangqi Liu, Lei Liu, Zuofeng Li, Xiaoyan Zhang, Fan Jiang, Qu Shi, Xiaoyan Zhou, Weiqi Sheng, Sanjun Cai, Xuan Li*, Ye Xu*,Peng Nan* (2011) Distinct mutations in MLH1 and MSH2 genes in hereditary non-polyposis colorectal cancer (HNPCC) families from China. BMB Rep. 44(5): 317-322.
  41. Jinshan Gui, Junhui Shen, and Laigeng Li* (2011) Functional Characterization of Evolutionarily Divergent 4-Coumarate:Coenzyme A Ligases in Rice. Plant Physiol. 157(2): 574–586.
  42. Dongliang Song, Wang Xi, Junhui Shen,Ting Bi, Laigeng Li* (2011) Characterization of the plasma membrane proteins and receptor-like kinases associated with secondary vascular differentiation in poplar. Plant Mol Biol. 76(1-2): 97–115.
  43. Hou Shen, Laigeng Li* (2011) Rapid characterization of woody biomass digestibility and chemical composition using Near-infrared Spectroscopy. J Integr Plant Biol.53(2):166-75
  44. Shanshan Zhao, Dominique Dufour, Teresa Sánchez, Hernan Ceballos, Peng Zhang* (2011) Development of waxy cassava with different biological and physico-chemical characteristics of starches for industrial applications. Biotechnol Bioeng. 108(8): 1925-1935.
  45. Jun Yang, Hui-Ping Bi, Wei-Juan Fan, Min Zhang, Hong-Xia Wang, Peng Zhang* (2011) Efficient embryogenic suspension culturing and rapid transformation of a range of elite genotypes of sweet potato (Ipomoea batatas [L.] Lam.). Plant Sci. 181: 701-711.
  46. Jun Yang, Dong An, Peng Zhang* (2011) Expression profiling of cassava storage roots reveals an active process of glycolysis/gluconeogenesis. J Integr Plant Biol. 53(3): 193-211.
  47. Jia Liu, Qijie Zheng, Qiuxiang Ma, Kranthi Kumar Gadidasu, Peng Zhang* (2011) Cassava genetic transformation and its application in breeding. J Integr Plant Biol. 53(7): 552-569.
  48. Mahender Aileni, Sadanandam Abbagani, Peng Zhang* (2011) Highly efficient production of transgenic Scoparia dulcis L. mediated by Agrobacterium tumefaciens: Plant regeneration via shoot organogenesis. Plant Biotechnol Rep. 5: 147-156.
  49. Richard Sayre*, John Beeching, Ed Cahoon, Chiedozie Egesi, Claude Fauquet, John Fellman, Martin Fregene, Wilhelm Gruissem, Sally Mallowa, Mark Manary, Bussie Maziya-Dixon, Ada Mbanaso, Daniel P. Schachtman, Dimuth Siritunga, Nigel Taylor, Herve Vanderschuren, Peng Zhang (2011) The BioCassava Plus Program: Biofortification of cassava for sub-Saharan Africa. Annu Rev Plant Biol. 62: 251-272.
  50. C. Wang, Z. Lentini, E. Tabares, M. Quintero, H. Ceballos*, B. Dedicova, C. Sautter, C. Olaya, P. Zhang (2011) Microsporogenesis and pollen formation in cassava. Biol Plantarum. 55(3): 469-478.
  51. Lida Yang, Zhongmei Chu , Yi Zhang*, Shengli Yang (2011) Gly-345 plays an essential role in Pyrococcus furiosus chaperonin function. Biotechnol Lett. 33(8): 1649-1655.
  52. 熊燕，陈大明，杨琛，赵国屏 (2011) 合成生物学发展现状与前景. 生命科学. 23(9) : 826-837.
  53. 吴标，王树军，夏立亮，季萍，葛海良，赵国屏，王颖* (2011) 羊驼非免疫重链单域抗体库的构建和鉴定[J]. 现代免疫学 Curr Immunol. 31(5)：353-357
  54. 严安 ，孙冰云，夏立亮，吴标，包文静，车小燕，孙志伟，金维荣，赵国屏，熊慧，王颖* (2011) 抗H5N1禽流感病毒VHH抗体库的构建[J]. 中国免疫学Chin J Immunol. 27(1)：44-49.
  55. 张云怡，曾令兵，郭晓奎，赵国屏* (2011) 细菌趋化过程中信号转导系统研究. 中国微生态学杂志 Chinese Journal of Microecolog. 23(1): 93-97.
  56. 王菁菁, 白云, 侯安继, 李冲, 康慧, 赵国屏, 王升跃* (2011) 非小细胞肺癌外周血有核细胞miRNA表达特点研究. 复旦学报(自然科学版) Journal of Fudan University (Natural Science) . 50(3): 302-312.
  57. 赵国屏(ZHAO，Guoping) (2011) 合成生物学的科学内涵和社会意义—合成生物学专刊序言. 生命科学 Chin Bull Life Sci 23(9): 825.
  58. 王钱福，严兴，魏维，张磊，钱昌丽，周志华* (2011) 生物元件的挖掘、改造与标准化. 生命科学. 23(9)：860-868.
  59. 于瑞嵩，宗文明，周志华* (2011) 异源表达【FeFe】氢酶的基因工程大肠杆菌的构建. 微生物学报. 51(11): 1468-1475.
  60. 卢志国，汪建峰，蒙海林，熊智强，王勇* (2011) 合成生物学与天然产物开发. 生命科学. 23(9): 900-911.
  61. 蒙海林，汪建峰，王勇*，张嗣良，王小宁 (2011) CYP725A4分子序列分析与结构建模. 华南理工大学学报. 39(5): 154-159.
  62. 陈菲菲，王勇*，王以光，赫卫清* (2011) 海洋微生物来源的天然产物开发研究进展. 应用与环境生物学报. 17(2): 287-294.
  63. 林灵，谭亿，陈菲菲，周红霞，王以光，赫卫清*，王勇* (2011) 大连渤海老虎滩海域沉积物可培养放线菌的多样性. 微生物学报. 51(2): 262-269.
  64. 陈菲菲，林灵，王以光，周红霞，陶佩珍，赫卫清*，王勇* (2011) 海洋细菌中活性化合物的筛选策略. 中国抗生素杂志. 36(5): 321-330.
  65. 赵运军，李来庚* (2011) 植物细胞壁松弛因子. 植物生理学报. 47 (10): 925-935.