首页>研究单元>中国科学院合成生物学重点实验室>研究成果>发表文章>2010

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  1. Wei Zhao, Yi Zhong, Hua Yuan, Jin Wang, Huajun Zheng, Ying Wang, Xufeng Cen, Feng Xu, Jie Bai, Xiaobiao Han, Gang Lu, Yongqiang Zhu, Zhihui Shao, Han Yan, Chen Li, Nanqiu Peng, Zilong Zhang, Yunyi Zhang, Wei Lin, Yun Fan, Zhongjun Qin, Yongfei Hu, Baoli Zhu, Shengyue Wang*, Xiaoming Ding* and Guoping Zhao*(2010) Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism. Cell Res. 20(10): 1096-1108.
  2. Lin Zhang, Lu Wang, Jin Wang, Xijun Ou, Guoping Zhao, Xiaoming Ding (2010) DNA cleavage is independent of synapsis during Streptomyces phage BT1 integrase-mediated site-specific recombination. J Mol Cell Biol. 2(5):264-275.
  3. Chengsong Cai, Yongzhang Zhu, Yi Zhong, Xiaofang Xin, Xiucao Jiang, Xiaoli Lou, Ping He, Jinhong Qin, Guoping Zhao, Shengyue Wang and Xiaokui Guo* (2010) Development of O-antigen gene cluster-specific PCRs for rapid typing six epidemic serogroups of Leptospira in China. BMC Microbiol. 10: 67.
  4. Qijun Wang, Yakun Zhang, Chen Yang, Hui Xiong, Yan Lin, Jun Yao, Hong Li, Lu Xie, Wei Zhao, Yufeng Yao, Zhibin Ning, Rong Zeng, Yue Xiong, Kunliang Guan, Shimin Zhao*, Guoping Zhao* (2010) Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux. Science. 327(5968): 1004-1007.
  5. Hui Dong, Yanjun Zhang, Hui Xiong, An Yan, Guohui Ding, Yangyi Chen, Liqun Xie, Jiazheng Chen, Guoqing Zhang, Pei Hao, Liming Cong, Yiyu Lu, Xiaoyan Che, Xiaoning Wang, Yixue Li, Kwok-Yung Yuen, Guoping Zhao, and Weirong Jin* (2010) Detection of human novel influenza A (H1N1) viruses using multi-fluorescent real-time RT-PCR. Virus Res. 147(1): 85-90.
  6. Ke Dong, Qingtian Li, Chang Liu, Yunyi Zhang, Guoping Zhao, and Xiaokui Guo* (2010) Cloning and characterization of three cheB genes in Leptospira interrogans. Acta Biochim Biophys Sin (Shanghai) . 42(3): 216-223.
  7. Liangdong Lu , Qing Sun, Xiaoyong Fan, Yi Zhong, Yufeng Yao*, Guoping Zhao* (2010) Mycobacterial MazG is a novel NTP pyrophosphohydrolase involved in oxidative stress response. J Biol Chem. 285(36): 28076-28085.
  8. Junwei Yang, Jing Xu, Xiaoying Chen, Yixuan Zhang, Xucheng Jiang, Xiaokui Guo, Guoping Zhao* (2010) Decrease of plasma platelet-activating factor acetylhydrolase activity in lipopolysaccharide induced mongolian gerbil sepsis model. PLoS One. 5(2): e9190.
  9. Xingjun Cao, Jie Dai, Hao Xu, Song Nie, Xiao Chang, Baoyu Hu, Quanhu Sheng, Lianshui Wang, Zhibin Ning, Yixue Li, Xiaokui Guo, Guoping Zhao and Rong Zeng* (2010) High-coverage proteome analysis reveals the first insight of protein modification systems in the pathogenic spirochete Leptospira interrogans. Cell Res. 20(2): 197-210.
  10. Chenhong Zhang, Menghui Zhang, Shengyue Wang, Ruijun Han, Youfang Cao, Weiying Hua, Yuejian Mao, Xiaojun Zhang, Xiaoyan Pang, Chaochun Wei, Guoping Zhao, Yan Chen* and Liping Zhao* (2010) Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice. ISME J. 4(2): 232-241.
  11. Jie Bai, Junrong Wang, Feng Xue, Jingsong Li, Lijing Bu, Junming Hu, Gang Xu, Qiyu Bao, Guoping Zhao, Xiaoming Ding, Jie Yan* and Jinyu Wu* (2010) proTF: a comprehensive data and phylogenomics resource for prokaryotic transcription factors. Bioinformatics 26(19): 2493-2495.
  12. Xianfeng Chen, Xinlei Li, Ping Wang, Yang Liu, Zhenguo Zhang, Guoping Zhao, Haiming XuJun Zhu, Xueying Qin, Suchao Chen, Landian Hu, Xiangyin Kong* (2010) Novel association strategy with copy number variation for identifying new risk Loci of human diseases. PLoS One. 5(8) pii: e12185.
  13. Ke Wang, Xiaohui Xiang, Fei He, Libo Lin, Rong Zhang, Xingjie Ping, Jisheng Han, Ning Guo, Qinghua Zhang, Cailian Cui, Guoping Zhao* (2010) Transcriptome profiling analysis reveals region-distinctive changes of gene expression in the CNS in response to different moderate restraint stress. J Neurochem. 113(6): 1436-1346.
  14. Yanxia Wei, Zhuoyang Zhang, Chang Liu, Yongzhang Zhu, Yongqiang Zhu, Huajun Zheng, Guoping Zhao, Shengyue Wang, and Xiaokui Guo* (2010) Complete genome sequence of Bifidobacterium longum JDM301. J Bacteriol.192(15): 4076-4077.
  15. Zuoquan Xie, Houkai Li, Ke Wang, Jingchao Lin, Qi Wang, Guoping Zhao, Wei Jia*, and Qinghua Zhang* (2010) Analysis of transcriptome and metabolome profiles alterations in fatty liver induced by high-fat diet in rat. Metabolism. 59(4): 554-560.
  16. Cong Ren, Yang Gu, Shiyuan Hu, Yan Wu, Pan Wang, Yunliu Yang , Chen Yang, Sheng Yang*, and Weihong Jiang* (2010) Identification and inactivation of pleiotropic regulator CcpA to eliminate glucose repression of xylose utilization in Clostridium acetobutylicum. Metab Eng. 12(5): 446–454.
  17. Yang Gu, Yi Ding, Cong Ren, Zhe Sun, Dmitry A Rodionov, Weiwen Zhang, Sheng Yang, Chen Yang* and Weihong Jiang* (2010) Reconstruction of xylose utilization pathway and regulons in Firmicutes. BMC Genomics.11: 255-268.
  18. Shiyuan Hu, Jun Chen, Zhongyi Yang, Lijun Shao, Hua Bai, Jiali Luo, Weihong Jiang, Yunliu Yang* (2010) Coupled bioconversion for preparation of N-acetyl-Dneuraminic acid using immobilized N-acetyl-D-glucosamine-2-epimerase and N-acetyl-Dneuraminic acid lyase. Appl Microbiol Biot. 85(5): 1383-1391.
  19. Jian Li , Lijun Zhao, Meng Zhao, Yunliu Yang, Weiwen Zhang, Sheng Yang* (2010) Screening and characterization of butanol tolerant microorganisms. Lett Appl Microbiol.50(4):373-379.
  20. Li Zhong, Qiuxiang Cheng, Xinli Tian, Liqian Zhao, and Zhongjun Qin* (2010) Characterization of the Replication, Transfer and Plasmid/Lytic Phage Cycle of the Streptomyces Plasmid-Phage pZL12. J Bacteriol.192(14):3747-54
  21. Ran Zhang, Shiyuan Peng, and Zhongjun Qin* (2010)Two Internal Origins of Replication on Streptomyces Linear Plasmid pFRL1. Appl Environ Microb. 76(17): 5676-5683.
  22. Zhiqun Lu, Pengfei Xie, and Zhongjun Qin* (2010) Promotion of markerless deletion of the actinorhodin biosynthetic gene cluster in Streptomyces coelicolor. Acta Biochim Biophys Sin (Shanghai) .42(10): 717-721.
  23. Tong Liu, Xinfeng Li, Zhihua Zhou* (2010) Improvement of hydrogen yield by hupr gene knock-out and nifa gene overexpression in Rhodobacter sphaeroides 6016. Int J Hydrogen Energ.35(18): 9603-9610.
  24. Qin Sun, Wei Xiao, Dan Xin, Jiping Shi, Xing Yan, Zhihua Zhou* (2010) Statistical optimization of process parameters on biohydrogen production from sucrose by co-culture of Clostridium acidisoli sp. Nov and Rhodobacter sphaeroides. Int J Hydrogen Energ. 35:4076-4084.
  25. Yue Huang, Wenming Zong, Xing Yang, Ruofan Wang, Christopher L. Hemme, Jizhong Zhou, Zhihua Zhou*(2010) Succession of the bacterial community and dynamics of hydrogen producers in a hydrogen-producing bioreactor. Appl Environ Microb.76(10): 3387-3390.
  26. Xinfeng Li, Tong Liu, Yongqiang Wu, Guoping Zhao, Zhihua Zhou* (2010) Derepressive effect of NH4+ on hydrogen production by deleting the glnA1 gene in Rhodobacter sphaeroides. Biotechnol Bioeng. 106(4): 564-572.
  27. Alei Geng, Yanling He, Changli Qian, Xing Yan and Zhihua Zhou (2010) Effect of key factors on hydrogen production from cellulose in a co-culture of Clostridium thermocellum and C. thermopalmarium. Bioresour Technol. 101(11): 4029-4033.
  28. Wei Xiong, Lixia Liu, Chao Wu, Chen Yang*, Qingyu Wu* (2010) 13C tracer and GC-MS analysis reveals metabolic flux distribution in oleaginous microalga Chlorella protothecoides. Plant Physiol.154(2):1001-1011
  29. Dmitry A Rodionov, Chen Yang, Xiaoqing Li, Irina A Rodionova, Yanbing Wang, Anna Y Obraztsova, Olga P Zagnitko,Ross Overbeek, Margaret F Romine, Samantha Reed, James K Fredrickson, Kenneth H Nealson, Andrei L Osterman*. (2010) Genomic encyclopedia of sugar utilization pathways in the Shewanella genus. BMC Genomics.11: 494.
  30. Yao Yu, Tao Xu, Yongtao Yu, Pei Hao* , Xuan Li* (2010) Association of tissue lineage and gene expression: conservatively and differentially expressed genes define common and special functions of tissues. BMC Bioinformatics 11(Suppl 11):S1
  31. Xiang Tang, Zhiyong Zhang, Wenjuan Zhang, Xingming Zhao, Xuan Li, Dong Zhang, Qiaoquan Liu, and Weihua Tang* (2010) Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis. Plant Physiol. 154(4):1855-1870.
  32. Tao Xu, Jie Ping, Yao Yu, Fudong Yu, Yongtao Yu, Pei Hao*, Xuan Li* (2010) Revealing parasite influence in metabolic pathways in Apicomplexa infected patients. BMC Bioinformatics 11(Suppl 11):S13
  33. Dongliang Song, Junhui Shen, Laigeng Li* (2010) Characterization of cellulose synthase complexes in Populus xylem differentiation. New Phytol. 187(3):777-790.
  34. Shanfa Lu*, Laigeng Li*, Gongke Zhou (2010) Genetic modification of wood quality for second-generation biofuel production. GM Crops.1(4):230-236.
  35. Horvath, B., Peszlen,I., Peralta,P., Kasal, B. and Li, L. (2010) Effect of lignin genetic modification on wood anatomy of aspen trees. IAWA J. 31(1): 29-38.
  36. Shiro Suzuki* , Norikazu Sakakibara, Laigeng Li, Toshiaki Umezawa, Vincent L. Chiang (2010) Profiling of phenylpropanoid monomers in developing xylem tissue of transgenic aspen (Populus tremuloides). J Wood Sci.56(1):71-76.
  37. Horvath, B., Peszlen, I., Peralta, P., Horvath. L, Kasal, B., & Li, L. (2010) Elastic modulus determination of transgenic aspen trees using a dynamic mechanical analyzer in static bending mode. Forest Prod J. 60(3):296-300.
  38. Horvath, B., Peralta, P., Peszlen, I., Divos, F., Kasal, B., & Li, L. (2010) Elastic modulus of transgenic aspen. Wood Research.55(1): 1-10.
  39. Peng Zhang*, Wenquan Wang, Genliang Zhang, Miroslav Kaminek, Petre Dobrev, Jia Xu, and Wilhelm Gruissem (2010) Senescence-inducible expression of isopentenyl transferase extends leaf life, increases drought stress resistance and alters cytokinin metabolism in cassava. J Integr Plant Biol.52(7): 653-669.
  40. Jia Xu, Mahender Aileni, Sadanandam Abbagani, Peng Zhang* (2010) A reliable and efficient method for total RNA isolation from various members of spurge family (Euphorbiaceae). Phytochem Anal. 21(5): 395–398.
  41. Huiping Bi, Mahender Aileni, Peng Zhang* (2010) Evaluation of cassava varieties for cassava mosaic disease resistance jointly by agro-inoculation screening and molecular markers. Afr J Plant Sci. 4 (9): 330-333.
  42. Hui Chen, Lida Yang, Yi Zhang*, Shengli Yang, (2010) Over-expression and characterization of the recombinant prefoldin from hyperthermophilic archaeum Pyrococcus furiosus. Biotechnol Lett. 32(3):429-434.
  43. 张霖，赵国屏*，丁晓明* (2010) 位点特异性重组系统的机理和应用. 中国科学:生命科学 40(12): 1090-1111.
  44. 鲍芸，张欣城，赵国屏，丁晓明* (2010) 天蓝色链霉菌中S-adenosylmethionine依赖性甲基转移酶同源基因sco1162调控孢子发育及抗生素合成. 复旦学报(自然科学版) 49(5): 552-557.
  45. 董辉，赵国屏* (2010) 核苷类似物耐药相关分子通路的研究进展. 广东医学(Guangdong Medical Journal). 31(3): 273-275.
  46. 杨俊杰，范文超，肖晗，关春鸿，曹传增，邵海峰，姜卫红，杨晟* . 枯草芽胞杆菌基因组混组方法. 生物工程学报. 26(10): 1385？1392.
  47. 顾阳，蒋宇，吴辉，刘旭东，李治林，李键，肖晗，沈兆兵，赵静波，杨蕴刘，，姜卫红* ，杨晟* (2010) 生物丁醇制造技术现状和展望. 生物工程学报. 26(7): 914？923
  48. 田新莉，钟莉，成秋香，陈振华，周敏，王韬，范云，杨勇，郭鹏，夏海洋，覃重军* (2010) 从87种中草药植物中分离内生放线菌及其规律的初探. 中国抗生素杂志. 35(9)：659-662.
  49. 朱颖旻，许铭翾，沈美娟，陈振华，覃重军* (2010) 红球菌线型质粒pNSL1的克隆、测序和复制区的鉴定. 微生物学报，50(8): 1098-1103.
  50. 杨勇，代玉梅，陈振华，覃重军* (2010) 五个链霉菌线型质粒端粒的克隆和分析. 微生物学报. 50(8) :1008-1013.
  51. 杨勇，钟莉，田新莉，成秋香，陈振华，覃重军* (2010) 小葱植物内生链霉菌线型质粒pYY8L的端粒与复制区的克隆和鉴定. 微生物学报. 50(4): 452-458.
  52. 张子飞，陈威华，覃重军* (2010) 高温链霉菌质粒pTSC2的测序分析和滚环复制方式的鉴定. 微生物学报.50(1): 41-47.
  53. 周志华，严兴，王钱福，张磊，张珺，赵国屏 (2010) 生物资源的开发利用技术. 工业生物技术发展报告：55-66.
  54. 杨琛* (2010) 基于比较基因组学重构细菌的代谢途径和调控网络. 生物工程学报 26(10): 1349-1356.
  55. 宋东亮，沈君辉，李来庚* (2010) 植物维管系统形成的调节机制. 植物生理通讯.46(5): 411-422.
  56. 沈君辉，宋东亮，赵运军，李来庚* (2010) 桉树基因组和功能基因组. 植物生理通讯.46(1):94-100.
  57. 赵姗姗, 李海霞, 刘佳, 黄晨, 马秋香, 张鹏* (2010) 我国主要栽培木薯品种体细胞胚胎发生与牙器官发生的比较研究. 农业生物技术学报.18(1): 37-44.
  58. 刘桂玲, 郑建利, 柳新明, 张鹏* (2010) 能源型甘薯新品种“泰中9号”高产栽培技术标准. 中国农学通报. 26(10): 122-127.