首页>研究单元>中国科学院合成生物学重点实验室>研究成果>发表文章>2009

2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004-2002

  1. Jin Wang and Guoping Zhao* (2009) GlnR positively regulates nasA transcription in Streptomyces coelicolor. Biochem Bioph Res Co. 386 (1): 77-81.
  2. Yungang He, Guohui Ding, Chao Bian, Zhong Huang, Ke Lan, Bing Sun, Xuecai Wang, Yixue Li, Hongyan Wang, Xiaoning Wang, Zhong Yang, Yang Zhong, Weirong Jin, Hui Xiong, Jianxin Dai, Yajun Guo, Hao Wang, Xiaoyan Che, Fan Wu, Zhenan Yuan, Xi Zhang, Zhiwei Cao, Xiaonong Zhou, Jiahai Zhou, Zhiyong Ma, Guangzhi Tong, Guoping Zhao* and Li Jin* (2009) The mutation network for the hemagglutinin gene from the novel influenza A (H1N1) virus. Chinese Sci Bull. 54(12): 2168-2170.
  3. Junwei Yang, Yixuan Zhang, Jing Xu, Yan Geng, Xiaoying Chen, Hongliang Yang, Shengnian Wang, Hengan Wang, Xucheng Jiang, Xiaokui Guo* and Guoping Zhao* (2009) Serum activity of platelet-activating factor acetylhydrolase is a potential clinical marker for leptospirosis pulmonary hemorrhage. PloS one. 4(1): e4181.
  4. Guoping Zhao* and Yang Zhong* (2009) Learn to fight from the war, Edior’s note. Chinese Sci Bull. 54(12): 1641.
  5. An Yan, Guohui Ding, Zhenfeng Zhou, Hui Dong, Yakun Zhang, Lei Zhu, Yungang He, Guoqing Zhang, Yixue Li, Bing Sun, Zhong Huang, Ke Lan, Li Jin, Hongyan Wang, Xiaoning Wang, Zhong Yang, Yang Zhong, JianXin Dai, Yajun Guo, Hao Wang, Xiaoyan Che, Fan Wu, Zhengan Yuan, Xi Zhang, Zhiwei Cao, Xiaonong Zhou, Jiahai Zhou, Zhiyong Ma, Guangzhi Tong, Guoping Zhao*, Weirong Jin* and Hui Xiong* (2009) Subtyping of type A influenza by sequencing the variable regions of HA gene specifically amplified with RT-PCR. Chinese Sci Bull. 54(12): 2164-2167.
  6. Xijun Ou, Bo Zhang, Lin Zhang, Guoping Zhao* and Xiaoming Ding* (2009) Characterization of rrdA, a TetR family protein gene involved in the regulation of secondary metabolism in Streptomyces coelicolor. Appl Environ Microb. 75(7): 2158-2165.
  7. Consortium for Influenza Study at Shanghai (Di Wu, Tianlei Xu, Jing Sun, Jianxin Dai, Guohui Ding, Yungang He, Zhengfeng Zhou, Hui Xiong, Hui Dong, Weirong Jin, Chao Bian, Li Jin, Hongyan Wang, Xiaoning Wang, Zhong Yang, Yang Zhong, Hao Wang, Xiaoyan Che, Zhong Huang, Ke Lan, Bing Sun, Fan Wu, Zhenan Yuan, Xi Zhang, Xiaonong Zhou, Jiahai Zhou, Zhiyong Ma, Guangzhi Tong, Yajun Guo, Guoping Zhao*, Yixue Li*, Zhiwei Cao* (2009) Structure modeling and spatial epitope analysis for HA protein of the novel H1N1 influenza virus. Chinese Science Bulletin 54 (13): 2171-2173.
  8. Wei Zhao, Chunyan Chen, Xiangyan Zhang, Weiqiang Lai, Baoyu Hu, Guoping Zhao, Jinhong Qin*, and Xiaokui Guo* (2009) Molecular characterization of the pL40 protein in Leptospira interrogans. Can J Microbiol. 55(6):739-749.
  9. Peng Zhang, Jun Ma, Zilong Zhang, Manwu Zha, Hai Xu, Guoping Zhao* and Jianping Ding* (2009) Molecular basis of the inhibitor selectivity and insights into the feedback inhibition mechanism of citramalate synthase from Leptospira interrogans. Biochem J. 421(1): 133-143.
  10. The Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium, Sequencing and assembly: Gang Lu, Shuangxi Ren, Yuezhu Wang, Wenyi Gu, Hui Kang, Jie Chen, Xiaoyun Chen, Shuting Chen, Lijun Wang, Jie Yan, Biyun Wang, Xinyan Lv, Lei Jin, Bofei Wang, Shiyin Pu, Xianglin Zhang, Wei Zhang, Qiuping Hu, Genfeng Zhu, Jun Wang, Jun Yu, Jian Wang, Huanming Yang, Zemin Ning, Matthew Beriman, Chialin Wei, Yijun Ruan, Guoping Zhao (Principal Investigator) and Shengyue Wang (Principal Investigator) (2009) The Schistosoma japonicum genome reveals features of host–parasite interplay. Nature. 460(7253): 345-351.
  11. Jianwen Han, Houfeng Zheng, Yong Cui, Liangdan Sun, Dongqing Ye, Zhi Hu, Jinhua Xu, Zhiming Cai, Wei Huang, Guoping Zhao, Hongfu Xie, Hong Fang, Qianjin Lu, Jianhua Xu, Xiangpei Li, Yunfeng Pan, Danqi Deng, Fanqin Zeng, Zhizhong Ye, Xiaoyan Zhang, Qingwen Wang, Fei Hao, Li Ma, Xianbo Zuo, Fusheng Zhou, Wenhui Du, Yilin Cheng, Jianqiang Yang, Songke Shen, Jian Li, Yujun Sheng, Xiaoxia Zuo, Weifang Zhu, Fei Gao, Peilian Zhang, Qing Guo, Bo Li, Min Gao, Fengli Xiao, Cheng Quan, Chi Zhang, Zheng Zhang, Kunju Zhu, Yang Li, Dayan Hu, Wensheng Lu, Jianlin Huang, Shengxiu Liu, Hui Li, Yunqing Ren, Zaixing Wang, Chunjun Yang, Peiguang Wang, Wenming Zhou, Yongmei Lv, Anping Zhang, Shengquan Zhang, Da Lin, Yi Li, Hui Qi Low, Min Shen, Zhifang Zhai, Ying Wang, Fengyu Zhang, Sen Yang*, Jianjun Liu & Xuejun Zhang* (2009) Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus. Nat Genet. 41(11): 1234-1237.
  12. The HUGO Pan-Asian SNP Consortium (Mahmood Ameen Abdulla, Ikhlak Ahmed, Anunchai Assawamakin, Jong Bhak, Samir K. Brahmachari, Gayvelline C. Calacal, Amit Chaurasia, Chien-Hsiun Chen, Jieming Chen, Yuan-Tsong Chen, Jiayou Chu, Eva Maria C. Cutiongco-de la Paz, Maria Corazon A. De Ungria, Frederick C. Delfin, Juli Edo, Suthat Fuchareon, Ho Ghang, Takashi Gojobori, Junsong Han, Sheng-Feng Ho, Boon Peng Hoh, Wei Huang, Hidetoshi Inoko, Pankaj Jha, Timothy A. Jinam, Li Jin*, Jongsun Jung, Daoroong Kangwanpong, Jatupol Kampuansai, Giulia C. Kennedy, Preeti Khurana, Hyung-Lae Kim, Kwangjoong Kim, Sangsoo Kim, Woo-Yeon Kim, Kuchan Kimm, Ryosuke Kimura, Tomohiro Koike, Supasak Kulawonganunchai, Vikrant Kumar, Poh San Lai, Jong-Young Lee, Sunghoon Lee, Edison T. Liu*,Partha P. Majumder, Kiran Kumar Mandapati, Sangkot Marzuki, Wayne Mitchell, Mitali Mukerji, Kenji Naritomi, Chumpol Ngamphiw, Norio Niikawa, Nao Nishida, Bermseok Oh, Sangho Oh, Jun Ohashi, Akira Oka, Rick Ong, Carmencita D. Padilla, Prasit Palittapongarnpim, Henry B. Perdigon, Maude Elvira Phipps, Eileen Png, Yoshiyuki Sakaki, Jazelyn M. Salvador, Yuliana Sandraling, Vinod Scaria,2 Mark Seielstad*,Mohd Ros Sidek, Amit Sinha, Metawee Srikummool, Herawati Sudoyo, Sumio Sugano, Helena Suryadi, Yoshiyuki Suzuki, Kristina A. Tabbada, Adrian Tan, Katsushi Tokunaga, Sissades Tongsima, Lilian P. Villamor, Eric Wang, Ying Wang, Haifeng Wang, Jer-Yuarn Wu, Huasheng Xiao, Shuhua Xu*, Jin Ok Yang, Yin Yao Shugart, Hyang-Sook Yoo, Wentao Yuan, Guoping Zhao, Bin Alwi Zilfalil, Indian Genome Variation Consortium) (2009) Mapping Human Genetic Diversity in Asia. Science 326 (5959): 1541-1545.
  13. Broňa Brejová,Tomá Vina, Yangyi Chen, Shengyue Wang, Guoping Zhao, Daniel G. Brown, Ming Li and Yan Zhou* (2009) Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence. Nucleic Acids Res. 37(7): e52.
  14. Yingfei Ma, Yun Zhang, Jiayue Zhang, Dongwei Chen, Yongqian Zhu, Huajun Zheng, Shengyue Wang, Chengying Jiang, Guoping Zhao and Shuangjiang Liu* (2009) Complete Genome of Comamonas testosteroni Reveals Its Genetic Adaptations to the Changing Environments. Appl Environ Microbiol. 75(21): 6812-6819.
  15. Zhuoyang Zhang, Chang Liu, Yongzhang Zhu, Yi Zhong, Yongqiang Zhu, Huajun Zheng, Guoping Zhao, Shengyue Wang and Xiaokui Guo* (2009) Complete genome sequence of Lactobacillus plantarum JDM1. J Bacteriol. 191(15): 5020-5021.
  16. Chao Bian, Xiuqin Zhang, Xingfeng Cai, Linqi Zhang, Zhiwei Chen, Ye Zha, Ying Xu, Ke Xu, Wei Lu, Linchen Yan, Jianwei Yuan, Jiannan Feng, Pei Hao, Qidi Wang, Guoping Zhao, Gang Liu, Xueliang Zhu, Hao Shen, Bojian Zheng, Beifen Shen and Bing Sun* (2009) Conserved amino acids W423 and N424 in receptor-binding domain of SARS-CoV are potential targets for therapeutic monoclonal antibody. Virology. 383(1): 39-46.
  17. Hong Zou, Qinglian Xie, Manfang Zhang, Chenghao Zhang, Guoping Zhao, Meilei Jin* and Lei Yu* (2009) Chronic alcohol consumption from adolescence-to-adulthood in mice—Effect on growth and social behavior. Drug and Alcohol Depen. 104 (1-2): 119-125.
  18. Xiaomei Gu, Zuoquan Xie, Qi Wang, Gang Liu, Yi Qu, Lu Zhang, Jiahu Pan, Guoping Zhao*, Qinghua Zhang* (2009) Transcriptome profiling analysis reveals multiple modulatory effects of Ginkgo bioba extract in the liver of rats on a high fat diet. FEBS J. 276(5): 1450-1458.
  19. Min Li, Haokui Zhou, Weiying Hua, Baohong Wang, Shengyue Wang, Guoping Zhao, Lanjuan Li, Liping Zhao and Xiaoyan Pang* (2009) Molecular diversity of Bacteroides spp. in human fecal microbiota as determined by group-specific 16S rRNA gene clone library analysis. Syst Appl Microbiol. 32(3): 193-200.
  20. Zuoquan Xie, Gai Liang, Lu Zhang, Qi Wang, Yi Qu, Yang Gao, Libo Lin, Sai Ye, Ji Zhang, Hui Wang, Guoping Zhao and Qinghua Zhang* (2009) Molecular mechanisms underlying the cholesterol-lowering effect of Ginkgo biloba extract in hepatocytes: a comparative study with lovastatin. Acta Pharmacol Sin. 30(9): 1262-1275.
  21. Xiaoyong Fan*, Hui Ma, Jian Guo, Zhongming Li, Zhiheng Cheng, Shengqi Guo and Guoping Zhao* (2009) A novel differential expression system for gene modulation in Mycobacteria. Plasmid. 61(1): 39-46.
  22. Hui Xiong, Kun Xia, Benshang Li, Guoping Zhao and Zhuohua Zhang* (2009) KChIP1, a potential modulator to GABAergic system. Acta Biochim Biophys Sin (Shanghai). 41(4): 295-300.
  23. Yong Zhang, Xue Zhou, Xie Ge, Jianhao Jiang, Muwang Li, Shihai Jia, Xiaonan Yang, Yunchao Kan, Xuexia Miao, Guoping Zhao, Fei Li* and Yongping Huang* (2009) Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori. PLoS ONE. 4(3): e4677.
  24. Qiyao Wang, Minjun Yang, Jingfan Xiao, Haizhen Wu, Xin Wang, Yuanzhi Lv, Lili Xu, Huajun Zheng, Shengyue Wang, Guoping Zhao, Qin Liu* and Yuanxing Zhang* (2009) Genome sequence of the versatile fish pathogen Edwardsiella tarda provides insights into its adaptation to broad host ranges and intracellular niches. PLoS ONE 4(10): e7646.
  25. Hui Dong, Xijin Ge, Yan Shen, Linlei Chen, Yalin Kong, Hongyi Zhang, Xiaobo Man, Liang Tang, Hong Yuan, Hongyang Wang, Guoping Zhao* and Weirong Jin* (2009) Gene expression profile analysis of human hepatocellular carcinoma using SAGE and LongSAGE. BMC Med Genomics. 2: 5.
  26. Zhu Chen and Guoping Zhao (2009) Editorial: Human Genomics in China？Ten Years Endeavor: From Planning to Implementation. Sci China C Life Sci. 52(1): 2-6.
  27. Haowen Li, Jinzhi Li, Guoping Zhao, Ying Wang* (2009) Current research status of immunology in the genomic era. Sci China C Life Sci. 52(1): 43-49.
  28. Shaopeng Chen, Ye Zhao, Guoping Zhao, Wei Han, Lingzhi Bao, K.N. Yu* and Lijun Wu* (2009) Up-regulation of ROS by mitochondria-dependent bystander signaling contributes to genotoxicity of bystander effects. Mutation Research 666 (1-2): 68-73.
  29. Yu Jiang, Chongmao Xu, Feng Dong, Yunliu Yang, Weihong Jiang* and Sheng Yang* (2009) Disruption of the acetoacetate decarboxylase gene in solvent-producing Clostridium acetobutylicum increases the butanol ratio. Metab Eng. 11(4-5): 284-291.
  30. Yuanheng Cai, Peter Trodler, Shimin Jiang, Weiwen Zhang, Yan Wu, Yinhua Lu, Sheng Yang and Weihong Jiang* (2009) Isolation and molecular characterization of a novel d-hydantoinase from Jannaschia sp. CCS1. FEBS J. 276(13): 3575-3588.
  31. Yang Gu, Jian Li, Lei Zhang, Jun Chen, Lixia Niu, Yunliu Yang, Sheng Yang* and Weihong Jiang* (2009) Improvement of xylose utilization in Clostridium acetobutylicum via expression of the talA gene encoding transaldolase from Escherichia coli. J Biotechnol. 143(4): 284-287.
  32. Junjie Yang, Weihong Jiang and Sheng Yang* (2009) mazF as a counter-selectable marker for unmarked genetic modification of Pichia pastoris. FEMS Yeast Res. 9(4): 600-609.
  33. Hong Yu, Jian Li, Dalong Zhang, Yunliu Yang, Weihong Jiang and Sheng Yang* (2009) Improving the thermostability of N-carbamyl-D-amino acid amidohydrolase by error-prone PCR. Appl Microbiol Biotechnol. 82(2): 279-285.
  34. Weihua Wang, Dan Shu, Lei Chen, Weihong Jiang* and Yinhua Lu (2009) Cross-talk between an orphan response regulator and a noncognate histidine kinase in Streptomyces coelicolor. FEMS Microbiol Lett. 294(2): 150-156.
  35. Lei Chen, Jun Chen, Yuqian Jiang,Weiwen Zhang, Weihong Jiang, Yinhua Lu* (2009) Transcriptomics analyses reveal global roles of the regulator AveI in Streptomyces avermitilis. FEMS Microbiol Lett. 298(2):199-207.
  36. Yang Gu, Shiyuan Hu, Jun Chen, Lijun Shao, Huiqi He, Yunliu. Yang , Sheng Yang* and Weihong Jiang*(2009) Ammonium acetate enhances solvent production by Clostridium acetobutylicum EA2018 using cassava as a fermentation medium. J Ind Microbiol Biot. 36(9): 1225-1232.
  37. H. Yu, S. Yang, W. Jiang, Y. Yang* (2009) Efficient biocatalytic production of D-4-hydroxyphenylglycine by whole cells of recombinant Ralstonia pickettii. Folia Microbiologica. 54(6): 509-515.
  38. Dan Shu, Lei Chen, Weihua Wang, Zhenyu Yu, Cong Ren, Weiwen Zhang, Sheng Yang, Yinhua Lu* and Weihong Jiang* (2009) afsQ1-Q2-sigQ is a pleiotropic but conditionally required signal transduction system for both secondary metabolism and morphological development in Streptomyces coelicolor. Appl Microbiol Biot. 81(6): 1149-1160.
  39. Pengfei Xie, Ana Zeng and Zhongjun Qin* (2009) cmdABCDEF, a cluster of genes encoding membrane proteins for differentiation and antibiotic production in Streptoymyces coelicolor A3(2). BMC Microbiol. 9: 157.
  40. Yongqiang Tian, Weihong Jiang, Guoping Zhao* and Zhongjun Qin* (2009) In vivo conjugation-coupled recombinational cloning of a Streptomyces lividans chromosomal telomeric DNA using a linear plasmid. Biotechnol Lett. 31(8): 1253-1258.
  41. Ran Zhang, Haiyang Xia, Peng Guo and Zhongjun Qin* (2009) Variation in the replication loci of Streptomyces linear plasmids. FEMS Microbiol Lett. 290(2): 209-216.
  42. Fanghua Liu, Guofang Lin, Guang Gao, Boqiang Qin, Jianshe Zhang, Guoping Zhao, Zhihua Zhou* and Jianhua She* (2009) Bacterial and archaeal assemblages in sediments of a large shallow freshwater lake, Lake Taihu, as revealed by denaturing gradient gel electrophoresis (DGGE). J Appl Microbiol. 106(3): 1022-1032.
  43. Fanghua Liu, Sibao Wang, Jianshe Zhang, Jun Zhang, Xing Yan, Haokui Zhou, Guoping Zhao and Zhihua Zhou* (2009) The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis. J Appl Microbiol. 106(3):952-966.
  44. Wenming Zong, Ruisong Yu, Peng Zhang, Meizhen Fan, Zhihua Zhou* (2009) Efficient hydrogen gas production from cassava and food waste by a two-step process of dark fermentation and photo-fermentation. Biomass Bioenergy. 33(10): 1458-1463.
  45. Grigory E. Pinchuk, Dmitry A. Rodionov, Chen Yang, Xiaoqing Li, Andrei L. Osterman*, Etienne Dervyn, Oleg V. Geydebrekht, Samantha B. Reed, Margaret F. Romine, Frank R. Collart, James H. Scott, Jim K. Fredrickson and Alexander S. Beliaeva* (2009) Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization. P Natl Acad Sci. 106(8): 2874–2879.
  46. Hervé Vanderschuren*, Adrian Alder, Peng Zhang*, Wilhelm Gruissem* (2009) Dose-dependent RNAi-mediated geminivirus resistance in the tropical root crop cassava. Plant Mol Biol. 70(3): 265–272.
  47. Guiling Liu, Jianli Zheng, Xinming Liu, Baofang Chen and Peng Zhang* (2009) Grey relational analysis of storage root yield and above-ground traits in different sweet potato genotypes. Chin Agric Sci Bull. 25(5): 125-131.
  48. Kannan A. M., Renugopalakrishnan V., Filipek S., Pingzuo Li, Audette G. F., and Munukutla L (2009) Bio-Batteries and Bio-Fuel Cells: Leveraging on Electronic Charge Transfer Proteins. J Nanosci Nanotechno. 9(3): 1665-1678.
  49. 杨琛，姜卫红，周志华，杨晟，张鹏，李来庚，覃重军，赵国屏 (2009) 合成生物学的研究进展. 《2009工业生物技术发展报告》: 216～221.
  50. 杨琛，姜卫红*，杨晟，赵国屏 (2009) 合成生物学与工业生物技术. 中国基础科学 5: 37-39.
  51. 张咏春，郝思捷，邹寅，赵国屏，丁晓明* (2009) 甜味蛋白Brazzein在Escherichia coli和Bacillus subtilis中的表达研究. 复旦学报(自然科学版). 48(1): 135-141.
  52. 王珂, 张庆华, 赵国屏 (2009) 针刺镇痛效应个体差异机制研究进展. 上海针灸杂志. 28(3): 125-8.
  53. 胡世元，杨蕴刘，杨晟，姜卫红 (2009) 丙酮丁醇梭菌的特性及遗传改造. 《2009工业生物技术发展报告》: 94-103.
  54. 顾阳，杨琛，杨晟，姜卫红* (2009) 生物炼制中的科学难点——戊糖利用及其调控机制. 中国基础科学 5: 71-74.
  55. 夏海洋，黄隽，胡敏杰，沈美娟，谢鹏飞，张亮，王海彬，覃重军* (2009) 构建有序排列的除虫链霉菌基因组的柯斯文库用于工业生产菌株的遗传改造. 中国抗生素杂志 34(7): 403-405.
  56. 朱颖旻，许铭翾，刘庆华，夏海洋，刘双江，覃重军* (2009) 一株动性球菌ZOYM的初步鉴定及其内源性质粒pPCZ1和pPCZ2的分析. 微生物通报. 36(9): 1294-1298.
  57. 宗文明, 于瑞嵩, 攀美珍, 周志华* (2009) 一株利用生物柴油废水产氢的光合菌的筛选、鉴定. 中国环境科学. 29(10): 1076-1081.
  58. 花强*，杨琛 (2009) 代谢流量比例分析及其在代谢工程中的应用. 生物工程学报. 25(9): 1303-1311.
  59. 马秋香，许佳，乔爱民，张鹏* (2009)木薯储藏根采后生理性变质研究进展. 热带亚热带植物学报 17(3): 309-314.