首页>研究单元>中国科学院合成生物学重点实验室>研究成果>发表文章>2012

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  1. Ying Wang, Xu-Feng Cen, Guoping Zhao* and Jin Wang* (2012) Characterization of a New GlnR Binding Box in the Promoter of amtB in Streptomyces coelicolor Inferred a PhoP/GlnR Competitive Binding Mechanism for Transcriptional Regulation of amtB. J Bacteriol. 194(19): 5237-5244
  2. Nanqiu Peng, Yi Zhong, Qing Zhang, Mingyue Zheng, Wei Zhao1, Hualiang Jiang, Chen Yang, Xiaokui Guo and Guoping Zhao* (2012) Characterization of acetyl-CoA and propionyl-CoA carboxylases encoded by Leptospira interrogans serovar Lai: an initial biochemical study for leptospiral gluconeogenesis via anaplerotic CO2 assimilation. Acta Bioch Bioph Sin (Shanghai) . 44(8): 692-702.
  3. Xiaoyang Zhi, Wei Zhao, Wenjun Li and Guoping Zhao* (2012) Prokaryotic ystematic in the genomics era. Anton van Leeuwenhoek J Microbiol. 101(1): 21-34.
  4. Yan Zhou, Jing Tao, Hao Yu, Jinjing Ni, Lingbing Zeng, Qihui Teng, Kwang Sik Kim, Guoping Zhao, Xiaokui Guo* and Yufeng Yao* (2012) Hcp family proteins secreted via the type VI secretion system coordinately regulate Escherichia coli K1 interaction with human brain microvascular endothelial cells. Infect Immun. 80(3): 1243-1251.
  5. Guohua Xiao, Shenghua Ying, Peng Zheng, Zhengliang Wang, Siwei Zhang, Xueqin Xie,Yanfang Shang, Raymond J. St. Leger, Guoping Zhao, Chengshu Wang & Mingguang Feng (2012) Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana. Sci Rep. 2:483
  6. Biao Tang, Wei Zhao (co-first), Huajun Zheng, Ying Zhuo, Lixin Zhang, and Guoping Zhao* (2012) Complete Genome Sequence of Amycolatopsis mediterranei S699 Based on De Novo Assembly via a Combinatorial Sequencing Strategy. J Bacteriol. 194(20): 5699-5700.
  7. Jie Zhou, Kelvin Kai-Wang To, Hui Dong, Zhongshan Cheng, Candy Choi-Yi Lau, Vincent K. M. Poon,1 Yanhui Fan, Youqiang Song, Herman Tse, Kwok-Hung Chan, Bojian Zheng, Guoping Zhao and Kwok-Yung Yuen* (2012) A functional variation in CD55 increases the severity of 2009 pandemic H1N1 influenza A virus infection. J Infect Dis. 206(4): 495-503.
  8. Songying Ouyang, Bin Gong, Jinzhi Li, Lixia Zhao, Wei Wu, Fushun Zhang, Lina Sun, Shujun Wang, Meng Pan, Chuan Li, Wenguang Liang, Neil Shaw, Jie Zheng, Guoping Zhao, Ying Wang*, Zhijie Liu* & Mifang Liang* (2012) Structural insights into a human anti-IFN antibody exerting therapeutic potential for systemic lupus erythematosus. J Mol Med (Berlin, Germany) . 90(7): 837-846.
  9. Ke Wang, Rong Zhang, Xiaohui Xiang, Fei He, Libo Lin, Xingjie Ping, Lei Yu, Jisheng Han, Guoping Zhao*, Qinghua Zhang*, Cailian Cui* (2012) Differences in Neural-Immune Gene Expression Response in Rat Spinal Dorsal Horn Correlates with Variations in Electroacupuncture Analgesia. PLoS ONE. 7(8): e42331.
  10. Chong Li, Lei Jin, Yun Bai, Qimin Chen, Lijun Fu, Minjun Yang, Huasheng Xiao, Guoping Zhao, Shengyue Wang* (2012) Genome-wide expression analysis in Down syndrome: insight into immunodeficiency. PLoS One. 7(11): e49130.
  11. Zhuoyang Zhang, Chang Liu, Yongzhang Zhu, Yanxia Wei, Fei Tian, Guoping Zhao, Xiaokui Guo* (2012) Safety assessment of Lactobacillus plantarum JDM1 based on the complete genome. Int J Food Microbiol. 153(1-2): 166-170.
  12. Ning Guo, Xiyao Gu, Jun Zhao, Guoping Zhao, Meilei Jin, Hong Zou*, Yuqiu Zhang*, Zhiqi Zhao*, Gang Jason Jin* and Lei Yu* (2012) Maxillary nerve compression in cynomolgus monkey Macaca fascicularis: altered somatic sensation and peripheral nerve firing. BMC Neuroscience. 13: 150.
  13. Ke Wang, Rong Zhang, Fei He, Libo Lin, Xiaohui Xiang, Xingjie Ping, Jisheng Han, Guoping Zhao, Qinghua Zhang* and Cailian Cui* (2012) Electroacupuncture frequency-related transcriptional response in rat arcuate nucleus revealed region-distinctive changes in response to low- and high-frequency electroacupuncture. J Neurosci Res. 90(7): 1464-1473.
  14. Yi Jiang, Haican Liu, Huajun Zheng, Biao Tang, Xiangfeng Dou, Xiuqin Zhao, Yongqiang Zhu, Bing Lu, Shengyue Wang, Haiyan Dong, Guoping Zhao, Yuanyuan Zhang, Biao Kan and Kanglin Wan* (2012) Evaluation of four candidate VNTR Loci for genotyping 225 Chinese clinical Mycobacterium tuberculosis complex strains. Biomed Environ Sci. 25(1): 82-90.
  15. Han Xiao, Zhilin Li, Yu Jiang, Yunliu Yang, Weihong Jiang, Yang Gu*, Sheng Yang* (2012) Metabolic engineering of D-xylose pathway in Clostridium beijerinckii to optimize solvent production from xylose mother liquid. Metab Eng. 14(5):569-578.
  16. Zhenyu Yu, Hong Zhu, Fujun Dang, Weiwen Zhang, Zhongjun Qin, Sheng Yang, Huarong Tan, Yinhua Lu*, Weihong Jiang* (2012) Differential regulation of antibiotic biosynthesis by DraR-K, a novel two-component system in Streptomyces coelicolor. Mol Microbiol. 85(3):535-556.
  17. Cong Ren, Yang Gu, Yan Wu, Weiwen Zhang, Chen Yang, Sheng Yang, and Weihong Jiang* (2012) Pleiotropic Functions of Catabolite Control Protein CcpA in Butanol-producing Clostridium acetobutylicum. BMC Genomics. 13(1): 349-368.
  18. Tao Wang, Zhenhua Chen, Qiuxiang Cheng, Min Zhou, Xinli Tian, Pengfei Xie, Li Zhong, Meijuan Shen and Zhongjun Qin* (2012) Characterization of replication and conjugation of plasmid pWTY27 from a widely distributed Streptomyces species. BMC Microbiol. 12:253.
  19. Yun Fan, Yumei Dai, Qiuxiang Cheng, Guangjun Zhang, Dongshu Zhang, Ping Fang*, Hang Wu, Linquan Bai*, Zixin Deng, Zhongjun Qin* (2012) A self-ligation method for PCR-sequencing the telomeres of Streptomyces and Mycobacterium linear replicons. J Microbiol Meth. 90(2):105-107.
  20. Min Zhou, Xinyun Jing, Pengfei Xie, Weihua Chen, Tao Wang, Haiyang Xia, Zhongjun Qin* (2012) Sequential deletion of all the PKS and NRPS biosynthetic gene clusters and a 900-kb subtelomeric sequence of the linear chromosome of Streptomyces coelicolor. FEMS Microbiol Lett. 333(2):169-179.
  21. Zhenhua Chen, Li Zhong, Meijuan Shen, Ping Fang*, Zhongjun Qin* (2012) Characterization of Streptomyces plasmid-phage pFP4 and its evolutionary implications. Plasmid. 68(3): 170-178.
  22. Gen Zou,Shaohua Shi,Yanping Jiang，Joost van den Brink, Ronald P de Vries,Ling Chen,Jun Zhang,Liang Ma,Chengshu Wang and Zhihua Zhou* (2012) Construction of a cellulase hyper-expressionsystem in Trichoderma reesei by promoter and enzyme engineering. Microb Cell Fact. 11:21.
  23. Alei Geng, Gen Zou, Xing Yan, Qianfu Wang, Jun Zhang, Fanghua Liu, Baoli Zhu, Zhihua Zhou* (2012) Expression and characterization of a novel metagenome-derived cellulase Exo2b and its application to improve cellulase activity in Trichoderma reesei. Appl Microb Biot. 96(4):951-62
  24. Qianfu Wang,Changli Qian,Xiao-Zhou Zhang,Nin Liu,Xing Yan, Zhihua Zhou* (2012) Characterization of a novel thermostable-glucosidase from a metagenomic library of termite gut. Enzym Microbl Tech. 51(6-7): 319-324.
  25. Semen A. Leyn, Fang Gao, Chen Yang*, Dmitry A. Rodionov* (2012) N-Acetylgalactosamine utilization pathway and regulon in proteobacteria. Genomic reconstruction and experimental characterization in Shewanella. J Biol Chem. 287(33): 28047-56.
  26. Lei Zhang, Semen A. Leyn, Yang Gu, Weihong Jiang, Dmitry A. Rodionov, Chen Yang* (2012) Ribulokinase and transcriptional regulation of arabinose metabolism in Clostridium acetobutylicum. J Bacteriol. 194(5): 1055-1064.
  27. Lixia Liu, Lei Zhang, Wei Tang, Yang Gu, Qiang Hua, Sheng Yang, Weihong Jiang, Chen Yang*. (2012) Phosphoketolase pathway for xylose catabolism in Clostridium acetobutylicum revealed by 13C metabolic flux analysis. J Bacteriol. 194(19): 5413-5422.
  28. Yongzhen Tao, Deng Liu, Xing Yang, Zhihua Zhou, Jeong K. Lee, Chen Yang* (2012) Network identification and flux quantification of glucose metabolism in Rhodobacter sphaeroides under photoheterotrophic H2-producing conditions. J Bacteriol. 194(2): 274-283.
  29. Irina A. Rodionova, Chen Yang, Xiaoqing Li, Oleg V. Kurnasov, Andrei L. Osterman*, Dmitry A. Rodionov* (2012) Diversity and versatility of the Thermotoga maritima sugar kinome. J Bacteriol. 194(20): 5552-5563.
  30. Mengtao Xiao, Hui Yang, Wei Xu, Shenghong Ma, Huaipeng Lin, Honguang Zhu, Lixia Liu, Ying Liu, Chen Yang, Yanhui Xu, Shimin Zhao, Dan Ye*, Yue Xiong*, Kun-Liang Guan. (2012) Inhibition of α-KG-dependent histone and DNA demethylases by fumarate and Succinate that are accumulated in mutations of FH and SDH tumor suppressors. Genes and Development 26(12): 1326-38.
  31. Zhiqiang Xiong, Yong Wang* (2012) Draft Genome Sequence of the Marine Streptomyces sp. Strain AA1529, Isolated from the Yellow Sea. J Bacteriol. 194(19): 5474-5475.
  32. Zhiqiang Xiong, Yong Wang* (2012) Draft Genome Sequence of Marine-Derived Streptomyces sp. Strain AA0539, Isolated from the Yellow Sea, China. J Bacteriol. 194(23):6622-6623.
  33. Wei Shao, Qiong-Yi Zhao, Xiu-Ye Wang, Xin-Yan Xu, Qing Tang, Muwang Li, Xuan Li*, Yong-Zhen Xu* (2012) Alternative splicing and trans-splicing events revealed by analysis of the Bombyx mori transcriptome. RNA. 18(7):1395-407.
  34. Yajun Wang, Yao Yu, Bohu Pan, Pei Hao, Yixue Li, Zhifeng Shao, Xiaogang Xu*, Xuan Li* (2012) Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome. BMC Systems Biol. 6(Suppl 3):S21.
  35. Shuhao Yu, Lulu Zheng, Yang Yu, Yun Li, Yajun Wang, Chengcheng Ma, Yixue Li, Xuan Li* and Pei Hao* (2012) A cross-species analysis method to analyze animal models’ similarity to human’s disease state. BMC Systems Biol. 6(Suppl 3):S18
  36. Jie Ping, Yajun Wang, Yao Yu, YiXue Li, Xuan Li* and Pei Hao* (2012) A comparative analysis of tissue gene expression data from high-throughput studies. Chinese Sci Bull. 57(22): 2920-2927.
  37. Jie Ping, Yajun Wang, Jingfang Wang, Xuan Li, Yixue Li and Pei Hao* (2012) Negatively cooperative binding properties of human Cytochrome P450 2E1 with monocyclic Substrates. Curr Drug Metab. 13(7):1024-31.
  38. Yajun Wang, Jingfang Wang, Jie Ping, Yao Yu, Ying Wang, Peng Lian, Xuan Li, Yixue Li, Pei Hao* (2012) Computational studies on the substrate interactions of Influenza A virus PB2 subunit. PLoS ONE. 7(9): e44079.
  39. Fei Liu, Yang Chen, Bing Yang, Jingfang Wang, Qin Peng, Qimiao Shao, Xuan Li, Brenda T. Beerntsen, Yechun Xu, Jianyong Li, Xiao-Qiang Yu, Erjun Ling* (2012) Drosophila melanogaster prophenoloxidases respond inconsistently to Cu(2+) and have different activity in vitro. Dev Comp Immunol. 36(3):619-28.
  40. Yang Chen, Fei Liu, Bing Yang, Anrui Lu, Shiwei Wang, Jingfang Wang, Qing-Zhi Ling, Xuan Li, Brenda T. Beerntsen, Erjun Ling* (2012) Specific amino acids affecting Drosophila melanogaster prophenoloxidase activity in vitro. Dev Comp Immunol. 38(1):88-97.
  41. Jingfang Wang*, Pei Hao, Yixue Li,Jianliang Dai, Xuan Li (2012) Exploration of conformational transition in the aryl-binding site of human FXa using molecular dynamics simulations. J Mol Model. 18(6):2717-2725.
  42. Weijuan Fan, Min Zhang, Hongxia Zhang, Peng Zhang* (2012) Improved tolerance to various abiotic stresses in transgenic sweet potato (Ipomoea batatas) expressing spinach betaine aldehyde dehydrogenase. PLoS ONE. 7(5): e37344
  43. Huiping Bi, Peng Zhang* (2012) Molecular characterization of two sweepoviruses identified from China and infectivity evaluation of cloned SPLCV-JS in Nicotiana benthamiana. Arch Virol. 157(3): 441-454.
  44. Qiuyun Xu, Anrui Lu, Guohua Xiao, Bing Yang, Jie Zhang, Xuquan Li, Jingmin Guan, Qimiao Shao, Brenda T. Beerntsen, Peng Zhang, Chengshu Wang,1and Erjun Ling* (2012) Transcriptional Profiling of Midgut Immunity Response and Degeneration in the Wandering Silkworm, Bombyx mori. PLoS ONE. 7(8): e43769.
  45. Dong An, Jun Yang, Peng Zhang* (2012) Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress. BMC Genomics. 13: 64.
  46. Aileni Mahender, Bulle Mallesham, Kota Srinivas, Gadidasu Kranthi Kumar, Kokkirala Venugopal Rao, Yarra Rajesh, Peng Zhang and Abbagani Sadanandam* (2012) A rapid and efficient method for in vitro shoot organogenesis and production of transgenic Bacopa monnieri L. mediated by Agrobacterium tumefaciens. In Vitro Cell Deveogy – Pl. 48(2):153-159.
  47. Rui Mei Li, Rui Jun Duan, Yi Meng Ji, Du Juan Xi, Jiao Liu, Jian Chun Guo, Peng Zhang, Shao Ping Fu (2012) Somatic Embryogenesis and Organogenesis of Biofuel Plant Cassava (Manihot esculenta Crantz) Chinese Cultivars. Advanced Materials Research. 512-515: 558-561.
  48. Kelly Daughtry, Youli Xiao, Deborah Stoner-Ma, Eunsun Cho, Allen M. Orville, Pinghua Liu*, and Karen N. Allen* (2012) Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic and on-beam Raman and UV-visible Spectroscopic Characterization of a Rieske-type Demethylase. J Am Chem Soc. 134(5):2823-34.
  49. Sowmya Viswanathan, Pingzuo Li, Wonbong Choi, Slawomir Filipek, T. A. Balasubramaniam,k and V. Renugopalakrishnan (2012) Protein–Carbon Nanotube Sensors: Single Platform Integrated Micro Clinical Lab for Monitoring Blood Analytes. Method in Enzymology. 509: 165-184.
  50. 宛宝山；张秋芬；周爱萍；赵国屏；姚玉峰* (2012) 结核分枝杆菌基因组学与基因组进化. 生物化学与生物物理进展39(7): 595-604.
  51. 刘晓，熊燕，王方，赵国屏* (2012) 合成生物学伦理、法律与社会问题探讨. 生命科学. 24(11): 1334-1338.
  52. 王珂，张嵘，赵国屏，张庆华，崔彩莲* (2012) 不同频率电针对正常大鼠脊髓背角的转录组学研究. 中国中西医结合杂志32(11): 1508-1511+1515.
  53. 夏立亮，吴标，程亚庭，包文静，赵国屏，王颖* (2012) 抗H5N1禽流感病毒羊驼重链单域抗体的制备和功能鉴定. 中国免疫学 28(2): 137-141.
  54. 夏立亮，吴标，程亚庭，蔡家麟，王颖*，赵国屏 (2012) 羊驼抗H5N1血凝素重链可变区-人IgGFc段嵌合抗体的制备和鉴定. 现代免疫学 32(1): 19-24.
  55. 尚晓冬；王国艳；潘伟；孙蓉；蔡艳华；谭琦；赵国屏 (2012) 猴头菌小分子活性成分研究进展. 食用菌学报 19(1): 79-84.
  56. 潘伟；刘瑞娜；章炉军；俞康莹；尚晓冬*；赵国屏；谭琦 (2012) 猴头菌提取物抗氧化活性研究. 食用菌学报 19(2): 95-99.
  57. 吴标；赵国屏；王颖* (2012) 胞内抗体研究进展及临床应用前景. 现代免疫学 32(4): 343-347.
  58. 唐玮，李键，陈军，杨晟 (2012) 大肠杆菌异源生产丁醇途径组装及启动子优化. 生物工程学报. 28(11): 1328-1336
  59. 成秋香，钟莉，覃重军* (2012) 青蒿植物内生链霉菌中的质粒pCQ4与噬菌体ФCQ4的研究. 微生物学报. 52(7): 825-831.
  60. 周敏，代玉梅，钟莉，覃重军* (2012) 链霉菌小质粒pDYM4.3k的复制与接合转移. 微生物学报. 52(7): 916-920.
  61. 代玉梅，杨勇，范云，周敏，沈美娟，钟莉，蔡晓布*，覃重军* (2012) 西藏土壤中分离的链霉菌含有丰富的线型和环型质粒. 微生物学通报. 39(11):1636-1641.
  62. 陈士林，朱孝轩，李春芳，王勇，姚辉，孙超，宋经元 (2012) 中药基因组学与合成生物学. 药学学报. 47(8): 1070-1078.
  63. 谭亿，林灵，周红霞，王以光， 赫卫清，杨兆勇，王勇* (2012) 一种发酵提取物中含卤有机化合物的早期鉴别方法. 中国抗生素杂志. 37(10): 1-5.
  64. 安明岩，褚仲梅，张毅* (2012) 链球菌蛋白G的构建、重组表达及鉴定. 工业微生物. 42(2): 1-5.
  65. 刘桂玲，张鹏*，郑建利，杨俊，赵丰玲，田昌庚，史春余 (2012) 不同类型甘薯品种主要经济性状和营养成分差异. 中国粮油学报. 27(2): 10-13.
  66. 王晴晴，杜杰，张鹏，蔡舒，朱胜利，曹献英* (2012) 木薯糊化淀粉海绵制备工艺研究. 化工新型材料. 40(4): 59-61.
  67. 韦祖生，陈显双，黎萍，张鹏，田益农* (2012) 8份木薯创新(C 系列)种质评价研究初报. 江西农业学报. 24(2): 21-25.