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发表文章
Richard Sayre*, John Beeching, Ed Cahoon, Chiedozie Egesi, Claude Fauquet, John Fellman, Martin Fregene, Wilhelm Gruissem, Sally Mallowa, Mark Manary, Bussie Maziya-Dixon, Ada Mbanaso, Daniel P. Schachtman, Dimuth Siritunga, Nigel Taylor, Herve Vanderschuren, Peng Zhang (2011) The BioCassava Plus Program: Biofortification of cassava for sub-Saharan Africa. Annu Rev Plant Biol. 62: 251-272. Yang Liu, Haiming Xu, Suchao Chen, Xianfeng Chen, Zhenguo Zhang, Zhihong Zhu, Xueying Qin, Landian Hu, Jun Zhu, Guoping Zhao, Xiangyin Kong* (2011) Genome-Wide Interaction-Based Association Analysis Identified Multiple New Susceptibility Loci for Common Diseases. PLoS Genet. 7(3): e1001338. Qiang Gao, Kai Jin, Shenghua Ying, Yongjun Zhang, Guohua Xiao, Yanfang Shang, Zhibing Duan, Xiao Hu, Xueqin Xie, Gang Zhou, Guoxiong Peng, Zhibing Luo, Wei Huang, Bing Wang, Weiguo Fang, Sibao Wang, Yi Zhong, Lijun Ma, Raymond J St Leger, Guoping Zhao, Yan Pei, Mingguang Feng*, Yuxian Xia* and Chengshu Wang* (2011) Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum. PLoS Genet. 7(1): e1001264. Yi Zhong, Xiao Chang, Xingjun Cao, Yan Zhang, Huajun Zheng, Yongzhang Zhu, Chengsong Cai, Zelin Cui, Yunyi Zhang, Yuanyuan Li, Guoping Zhao, Shengyue Wang*, Yixue Li*, Rong Zeng*, Xuan Li*, Xiaokui Guo* (2011) Comparative Proteogenomic Analysis of the Leptospira interrogans Virulence Attenuated Strain IPAV against the Pathogenic Strain 56601. Cell Res. 21(8): 1210-1229. Jinshan Gui, Junhui Shen, and Laigeng Li* (2011) Functional Characterization of Evolutionarily Divergent 4-Coumarate:Coenzyme A Ligases in Rice. Plant Physiol. 157(2): 574-586. Semen A. Leyn, Xiaoqing Li, Qingxiang Zheng, Pavel S. Novichkov, Samantha Reed, Margaret F. Romine, James K. Fredrickson, Chen Yang, Andrei L. Osterman, and Dmitry A. Rodionov* (2011) Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis. J Biol Chem. 286(41): 35782-35794. Jun Yin, Zixin Deng, Guoping Zhao and Xi Huang* (2011) The N-terminal nucleophile serine of cephalosporin acylase executes the second autoproteolytic cleavage and acylpeptide hydrolysis*. J Biol Chem. 286(27): 24476-24486. Zhoutong Sun, Yuanyuan Ning, Lixia Liu, Yingmiao Liu, Bingbing Sun, Weihong Jiang, Chen Yang, Sheng Yang* (2011) Metabolic engineering of the L-phenylalanine pathway in Escherichia coli for the production of S- or R-mandelic acid. Microb Cell Fact. 10(1): 71. Pei Hao, Huajun Zheng, Yao Yu, Guohui Ding, Wenyi Gu, Shuting Chen, Zhonghao Yu, Shuangxi Ren, Munehiro Oda, Tomonobu Konno, Shengyue Wang, Xuan Li*, ZaiSi Ji* and Guoping Zhao* (2011) Complete Sequencing and Pan-Genomic Analysis of Lactobacillus delbrueckii subsp. bulgaricus Reveal Its Genetic Basis for Industrial Yogurt Production. PLoS ONE. 6(1): e15964. Jun Zhang, Yongjun Wei, Wei Xiao, Zhihua Zhou, Xing Yan* (2011) Performance and spatial community succession of an anaerobic baffled reactor treating acetone–butanol–ethanol fermentation wastewater. Bioresour Technol. 102: 7407-7414. Dongliang Song, Wang Xi, Junhui Shen,Ting Bi, Laigeng Li* (2011) Characterization of the plasma membrane proteins and receptor-like kinases associated with secondary vascular differentiation in poplar. Plant Mol Biol. 76(1-2): 97-115. Shiyuan Hu, Huajun Zheng, Yang Gu, Jingbo Zhao, Weiwen Zhang, Yunliu Yang, Shengyue Wang, Guoping Zhao, Sheng Yang* and Weihong Jiang* (2011) Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018. BMC Genomics. 12: 93. Ruofan Wang, Wenming Zong, Changli Qian, Yongjun Wei，Ruisong Yu, Zhihua Zhou* (2011) Isolation of Clostridium perfringens strain W11 and optimization of its biohydrogen production by genetic modification. Int J. Hydrogen Energy. 36: 12159-12167. Ning Liu, Xing Yan, Meiling Zhang, Lei Xie, Qian Wang,Yongping Huang, Xuguo Zhou, Shengyue Wang, Zhihua Zhou* (2011) Microbiome of fungus-growing termites: a new reservoir for mining lignocellulase genes. Appl Environ Microbiol. 77: 48-56. Han Xiao, Yang Gu, Yuanyuan Ning, Yunliu Yang, Wilfrid J. Mitchell, Sheng Yang*, and Weihong Jiang* (2011) Confirmation and Elimination of Xylose Metabolism Bottlenecks in Glucose Phosphoenolpyruvate-Dependent Phosphotransferase System-Deficient Clostridium acetobutylicum for Simultaneous Utilization of Glucose, Xylose, and Arabinose. Appl Environ Microbiol. 77(22): 7886-7895. Hui Dong*, Hongyi Zhang, Jianping Liang, Huadong Yan, Yangyi Chen, Yan Shen, Yalin Kong, Shengyue Wang, Guoping Zhao and Weirong Jin (2011) Digital karyotyping reveals probable target genes at 7q21.3 locus in hepatocellular carcinoma. BMC Med Genomics. 4: 60. Yongzhen Tao, Deng Liu, Xing Yan, Zhihua Zhou, Jeong K. Lee, and Chen Yang* (2012) Network identification and flux quantification of glucose metabolism in Rhodobacter sphaeroides under photoheterotrophic H2-producing conditions. J. Bacteriol. 194(2): 274-283. Yinhua Lu, Juanmei He, Hong Zhu, Zhenyu Yu, Rui Wang, Yunliang Chen, Fujun Dang, Weiwen Zhang, Sheng Yang, and Weihong Jiang* (2011) An Orphan Histidine Kinase, OhkA, Regulates Both Secondary Metabolism and Morphological Differentiation in Streptomyces coelicolor. J. Bacteriol. 193(12): 3020-3032. Lei Zhang, Semen Leyn, Yang Gu, Weihong Jiang, Dmitry Rodionov*, and Chen Yang* (2012) Ribulokinase and Transcriptional Regulation of Arabinose Metabolism in Clostridium acetobutylicum. J Bacteriol. 194(5): 1055-1064. Fuchao Li, Peng Jiang, Huajun Zheng, Shengyue Wang, Guoping Zhao, Song Qin*, and Zhaopu Liu* (2011) Draft Genome Sequence of the Marine Bacterium Streptomyces griseoaurantiacus M045, Which Produces Novel Manumycin-Type Antibiotics with a pABA Core Component. J. Bacteriol. 193(13): 3417-3418. Shanshan Zhao, Dominique Dufour, Teresa Sánchez, Hernan Ceballos, Peng Zhang* (2011) Development of waxy cassava with different biological and physico-chemical characteristics of starches for industrial applications. Biotechnol Bioeng. 108(8): 1925-1935. Li Zhu, Rongsheng Tao, Yi Wang, Yu Jiang, Xin Lin,Yunliu Yang, Huabao Zheng, Weihong Jiang, Sheng Yang* (2011) Removal of L: -alanine from the production of L: -2-aminobutyric acid by introduction of alanine racemase and D: -amino acid oxidase. Appl Microbiol Biotechnol. 90(3):903-910. Dalong Zhang, Fuyun Zhu, Wenchao Fan, Rongsheng Tao, Hong Yu, Yunliu Yang, Weihong Jiang, Sheng Yang* (2011) Gradually accumulating beneficial mutations to improve the thermostability of N-carbamoyl-D: -amino acid amidohydrolase by step-wise evolution. Appl Microbiol Biotechnol. 90(4): 1361-1371. Qiongyi Zhao, Yi Wang, Yimeng Kong, Da Luo, Xuan Li* and Pei Hao* (2011) Optimizing de novo transcriptome assembly fom short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12(Suppl 14): S2. Weihua Chen and Zhongjun Qin* (2011) Development of a gene cloning system in a fast-growing and moderately thermophilic Streptomyces species and heterologous expression of Streptomyces antibiotic biosynthetic gene clusters. BMC Microbiol. 11(1): 243. Bikui Tang, Ruihua Zhao, Yong Sun, Ying Zhu, Jiang Zhong, Guoping Zhao and Naishuo Zhu* (2011) Interleukin-6 expression was regulated by epigenetic mechanisms in response to influenza virus infection or dsRNA treatmen. Mol Immunol. 48(8): 1001-1008. Jun Yang, Hui-Ping Bi, Wei-Juan Fan, Min Zhang, Hong-Xia Wang, Peng Zhang*. (2011) Efficient embryogenic suspension culturing and rapid transformation of a range of elite genotypes of sweet potato (Ipomoea batatas [L.] Lam.). Plant Science. 181: 701-711. Liang Ma, Jun Zhang, Gen Zou, Chengshu Wang, Zhihua Zhou* (2011) Improvement of cellulase activity in Trichoderma reesei by heterologous expression of a beta-glucosidase gene from Penicillium decumbens. Enzyme Microb. Technol. 49(4): 366-371. Wenqian Wei, Fangqi Liu, Lei Liu, Zuofeng Li, Xiaoyan Zhang, Fan Jiang, Qu Shi, Xiaoyan Zhou, Weiqi Sheng, Sanjun Cai, Xuan Li*, Ye Xu*, Peng Nan* (2011) Distinct mutations in MLH1 and MSH2 genes in hereditary non-polyposis colorectal cancer (HNPCC) families from China. BMB Rep. 44(5): 317-322. Jingfang Wang*, Pei Hao, Yixue Li, Jianliang Dai, Xuan Li (2011) Exploration of conformational transition in the aryl-binding site of human FXa using molecular dynamics simulations. J Mol Model. DOI 10.1007/s00894-011-1295-x. Lida Yang, Zhongmei Chu, Yi Zhang*, Shengli Yang (2011) Gly-345 plays an essential role in Pyrococcus furiosus chaperonin function. Biotechnol Lett. 33(8): 1649-1655. Zhihui Shao, Jin Gao, Xiaoming Ding, Jin Wang, Juishen Chiao, Guoping Zhao* (2011) Identification and functional analysis of a nitrate assimilation operon nasACKBDEF from Amycolatopsis mediterranei U32. Arch Microbiol. 193(7): 463-477. C. Wang, Z. Lentini, E. Tabares, M. Quintero, H. Ceballos*, B. Dedicova, C. Sautter, C. Olaya, P. Zhang (2011) Microsporogenesis and pollen formation in cassava. Biol Plantarum. 55(3): 469-478. Jun Yang, Dong An, Peng Zhang* (2011) Expression profiling of cassava storage roots reveals an active process of glycolysis/gluconeogenesis. J Integr Plant Biol. 53(3): 193-211. Jia Liu, Qijie Zheng, Qiuxiang Ma, Kranthi Kumar Gadidasu, Peng Zhang* (2011) Cassava genetic transformation and its application in breeding. J Integr Plant Biol. 53(7): 552-569. Qing Zhang, Yunyi Zhang, Yi Zhong, Jun Ma, Nanqiu Peng, Xingjun Cao, Chen Yang, Rong Zeng, Xiaokui Guo and Guoping Zhao* (2011) Leptospira interrogans encodes an ROK family glucokinase involved in a cryptic glucose utilization pathway. Acta Biochim Biophys Sin (Shanghai). 43(8): 618-29. Peng Guo, Qiuxiang Cheng, Pegnfei Xie, Yun Fan, Weihong Jiang, and Zhongjun Qin* (2011) Characterization of the multiple CRISPR loci on Streptomyces linear plasmid pSHK1. Acta Biochim Biophys Sin (Shanghai). 43(8): 630-639. Hui Dong, Yangyi Chen, Yan Shen, Shengyue Wang, Guoping Zhao* and Weirong Jin* (2011) Artificial duplicate reads in sequencing data of 454 Genome Sequencer FLX System. Acta Biochim Biophys Sin (Shanghai). 43 (6): 496-500. Ana Zeng, Tao Wang, Haiyang Xia, Shiyuan Peng, Weihua Chen, Chaneglin Jiang, Lihua Xu, Li Zhong, Meijuan Shen*, and Zhongjun Qin* (2011) Development of a vector and host system and characterization of replication of plasmid pSQ10 in moderately halophilic Nocardiopsis. Acta Biochim Biophys Sin (Shanghai). 43(9): 738-743. Huan Yuan, Wei Zhao, Yi Zhong, Jin Wang, Zhongjun Qin, Xiaoming Ding and Guoping Zhao* (2011) Two genes, rif15 and rif16, of the rifamycin biosynthetic gene cluster in Amycolatopsis mediterraneilikely encode a transketolase and a P450 monooxygenase, respectively, bothessential for the conversion of rifamycin SV into B. Acta Biochim Biophys Sin (Shanghai). 43(12): 948-956. Mahender Aileni, Sadanandam Abbagani, Peng Zhang* (2011) Highly efficient production of transgenic Scoparia dulcis L. mediated by Agrobacterium tumefaciens: Plant regeneration via shoot organogenesis. Plant Biotechnol Rep. 5: 147-156. Chen Feifei, Lin Ling, Wang Lu, Tan Yi, Zhou Hongxia, Wang Yiguang, Wang Yong*, He Weiqing*. (2011) Distribution of dTDP–glucose-4,6 dehydratase genes and diversity of potential glycosylated natural products in marine bacteria. Appl Microbiol Biotechnol. 90(4): 1347-1359. Hailin Meng, Zhiguo Lu, Yong Wang*, Siliang Zhang, Xiaoning Wang (2011) In silico analysis of erythromycin precursor 6-deoxyerythronolide B by heterologous biosynthesis in Escherichia coli. Biotechnol and Bioproc E. 16(3): 445-456. Hailin Meng, Yong Wang*, Siliang Zhang, Xiaoning wang (2011) In silico analysis and experimental improvement of the terpenoid precursor supply pathways for taxadiene heterologous biosynthesis in Escherichia coli. Biotechnol and Bioproc E. 16 (2): 205-215. Yongcong Tan, Qijun Wang, Guoping Zhao* and Yufeng Yao* (2011) Protein post-translational modification in prokaryotes. Prog Biochem Biophys. 38(3): 197-203. Yun Li, Kang Tu, Siyuan Zheng, JingfangI Wang, Yixue Li, Pei Hao, Xuan Li* (2011) Association of feature gene expression with structural fingerprints of chemical compounds. J Bioinform Comput Biol. 9(4): 503-519. Yang Gu, Yu Jiang, Hui Wu, Xudong Liu, Zhilin Li, Jian Li, Han Xiao, Zhaobing Shen, Hongjun Dong, Yunliu Yang, Yin Li, Weihong Jiang* and Sheng Yang* (2011) Economical challenges to microbial producers of butanol: Feedstock, butanol ratio and titer. Biotechnol J. 6(11): 1348-57. Lin Zhang, Guoping Zhao*, Xiaoming Ding* (2011) Tandem assembly of the epothilone biosynthetic gene cluster by in vitro site-specific recombination. Scientific Reports. 1, 141. Hou Shen, Laigeng Li (2011) Rapid characterization of woody biomass digestibility and chemical composition using Near-infrared Spectroscopy. J. Integr. Plant Biol. 53(2): 166-175. 于瑞嵩，宗文明，周志华* (2011) 异源表达【FeFe】氢酶的基因工程大肠杆菌的构建. 微生物学报. 51(11): 1468-1475. 王钱福，严兴，魏维，张磊，钱昌丽，周志华* (2011).生物元件的挖掘、改造与标准化. 生命科学. 23: 860-868. 赵运军，李来庚* (2011) 植物细胞壁松弛因子. 植物生理学报. 47 (10): 925-935. 陈菲菲，王勇*，王以光，赫卫清* (2011) 海洋微生物来源的天然产物开发研究进展. 应用与环境生物学报. 17(2): 287-294. 林灵，谭亿，陈菲菲，周红霞，王以光，赫卫清*，王勇* (2011) 大连渤海老虎滩海域沉积物可培养放线菌的多样性研究. 微生物学报. 51(2): 262-269. 陈菲菲，林灵，王以光，周红霞，陶佩珍，赫卫清*，王勇* (2011) 海洋细菌活性化合物的筛选策略. 中国抗生素杂志. 36(5): 321-330. 蒙海林，汪建峰，王勇*，张嗣良，王小宁 (2011) CYP725A4分子序列分析与结构建模. 华南理工大学学报. 39(5): 154-159. 卢志国，汪建峰，蒙海林，熊智强，王勇* (2011) 合成生物学与天然产物开发. 生命科学. 23(9): 900-911.
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